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I'll try and help you with the Flash issue since this is the Flash part of the forums.
To use Flash stuff (animations, buttons, ui elements, etc...), you have to put the Flash .swf file into the browser. You can do this with the swfObject Javascript library. The down side is only users that have Flash installed will be able to view your content.
CSS/HTML/Javascript (HTML5) is probably a better way to go unless you're making a big animation or game or something.
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